Galaxy workshop at UQ

On May 15-16 we run another Galaxy workshop organised by QFAB. Topic: Variant  calling. Links to presentations:
Introduction to Galaxy
Variant calling in Galaxy
Data upload by ftp
Galaxy workflow.

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Galaxy talk at Centre for Digital Scholarship, UQ

We have a talk about Galaxy on Wednesday 9 May 2018, 12:00pm – 1:00pm at Centre for Digital Scholarship, UQ library. The venue: room 525, Level 5, Duhig tower (Building 2), St Lucia (above Merlo Cafe). Registration is required – see the announcement at Centre for Digital Scholarship for additional information. It is an introductory talk aimed for people new to Galaxy platform and interested in analysis of high throughput sequencing data. The seminar includes a Galaxy demo for RNA-Seq analysis and creation of a Galaxy workflow.

Galaxy seminar at UQ

Come to our talk about Galaxy-qld at the Centre for Digital Scholarship in the UQ Library. The seminar is essentially an introduction to analysis of high throughput sequencing data using Galaxy platform. Galaxy is user-freindly web-based platform for computationally intensive data analysis. It does not require IT knowledge or programming skills. The talk might be useful for biologists not familiar with high throughout sequencing methods but interested in analysis of nextGen sequencing data.

9.30am – 10.30am, Thursday 8 February 2018

St Lucia campus
Duhig Building (2)
Centre for Digital Scholarship (Level 5)
eZone (Room 501) – i.e. Level 5 above Merlot Café

Click here to see details online.

RNA-Seq workshop at UQ

We run RNA-Seq in Galaxy workshop at UQ on November 15-16, 2017. Registration is essential. The participants will use Galaxy-tut server.

We will do the following:
data upload by ftp
GVL Basic RNA-Seq tutorial
GVL Advanced RNA-Seq tutorial
Galaxy workflows.

Slides from the workshop are available as pdfs:
Introduction to NGS
RNA-Seq in Galaxy.

There will be a limited user support for Galaxy-qld during the workshop.

Microbial genomics workshop at UQCCR

On November 4, 2017 we are holding a Galaxy training at UQCCR, Herston, for participants of the Practical Microbial Genomics Workshop. The training  is based on Public data → assembly, annotation, MLST tutorial created by Melbourne Bioinformatics.

Slides for the workshop: pdf

Because of time constrains we will use files from a data library available on the server. Instruction for data import: pdf

Workshop: RNA-Seq analysis using Galaxy

QFAB announced a new Galaxy workshop on RNA-Seq analysis.

When: Wed, 13/09/2017 – 09:00 to Thu, 14/09/2017 – 12:30.

Where: MultiMedia Room 3.141, Queensland Bioscience Precinct (building 80), The University of Queensland, St Lucia.

Cost: $25. Registration is essential.

Participants need to bring a wi-fi-enabled laptop capable to eduroam connection. The room is equipped with power points for every participant.

Presentations from the workshop (pdf):
Introduction to Galaxy
RNA-Seq with Galaxy
Galaxy workflow.

Instructions for exercises:
Data upload by ftp
Galaxy workflow.

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