Galaxy workshop at UQ

On May 15-16 we run another Galaxy workshop organised by QFAB. Topic: Variant  calling. Links to presentations:
Introduction to Galaxy
Variant calling in Galaxy
Data upload by ftp
Galaxy workflow.

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RNA-Seq Galaxy workshop at UQ

On May 1-2, 2018 we run a Galaxy workshop on RNA-Seq for QFAB. The event is fully booked. Places are still available for other Galaxy workshops.

Presentations are available for download:
Introduction to Galaxy (pptx)
Introduction to RNA-Seq (pptx)
Upload using ftp (pdf)
Galaxy workflow (pdf)

Workshop: RNA-Seq analysis using Galaxy

QFAB announced a new Galaxy workshop on RNA-Seq analysis.

When: Wed, 13/09/2017 – 09:00 to Thu, 14/09/2017 – 12:30.

Where: MultiMedia Room 3.141, Queensland Bioscience Precinct (building 80), The University of Queensland, St Lucia.

Cost: $25. Registration is essential.

Participants need to bring a wi-fi-enabled laptop capable to eduroam connection. The room is equipped with power points for every participant.

Presentations from the workshop (pdf):
Introduction to Galaxy
RNA-Seq with Galaxy
Galaxy workflow.

Instructions for exercises:
Data upload by ftp
Galaxy workflow.

Open file in a new tab by clicking on the link above. Switch to the new tab and download the file on your computer.

Galaxy workshop: assembly of microbial genomes

A Galaxy workshop, Genome assembly using Galaxy, is scheduled on August 2-3, 2017. The event is arranged by QFAB. The training will be done by QFAB stuff and members of GVL-Qld team. The registration is essential.

Venue: Room 3.141, IMB/QBP, UQ, St Lucia

Start: 9:00 AM, August 2, 2017
End: 12:30, August 3, 2017

Presentations for the workshops are available in pdf format:
Introduction to Galaxy
Genome assembly with Galaxy

Presentation from RNA-Seq workshop at IMB

Today we had a Galaxy workshop for postgraduate students at IMB. The participants used data and protocol from the Basic RNA-Seq Galaxy tutorial provided by Genomics Virtual Lab. The second half of the workshop was dedicated to Galaxy workflows. The participants created, modified and used a Galaxy workflow.

The workshop was done on Galaxy-tut. The server was updated recently, and it coped well with the load during the workshop.

The workshop presentation is available for download as a pdf file.

Galaxy workshop at UQ: expression of interest

Are you interested in attending a Galaxy workshop at UQ? Email Igor at i.makunin@uq.edu.au. The date and place will be arranged when I get expression of interest from several persons. The proposed topic: RNA-Seq in Galaxy (analysis of differential gene expression using high throughput sequencing data). The workshop is aimed on new Galaxy users. It will cover data import, alignment of reads to a reference genome, Cuffdiff, data manipulation in Galaxy. The participants will create and use a Galaxy workflow.